Taxonomy

This complete taxonomic hierarchy of Bacteria and Archaea was manually constructed by the EzBioCloud team using numerous maximum likelihood phylogenetic trees based on 16S sequences.
Clostridiales Prevot 1953
Acidaminobacter Stams and Hansen 1985
Fusibacter Ravot et al. 1999
Guggenheimella Wyss et al. 2005
Aristaeellaceae Mahoney-Kurpe et al. 2023
Aristaeella Mahoney-Kurpe et al. 2023
Bianqueaceae Liu et al. 2021
Bianquea Liu et al. 2021
Caldicoprobacteraceae Yokoyama et al. 2010
Caldicoprobacter Yokoyama et al. 2010
Anaeromicrobium Zhang et al. 2017
Anaerosolibacter Hong et al. 2015
Caminicella Alain et al. 2002
Crassaminicella Lakhal et al. 2015
Geosporobacter Klouche et al. 2007
Inediibacterium Alou et al. 2017
Maledivibacter Li et al. 2016
Marinisporobacter Vandieken et al. 2017
Paramaledivibacter Li et al. 2016
Salimesophilobacter Zhang et al. 2013
Thermotalea Ogg and Patel 2009
Wukongibacter Li et al. 2016
Christensenellaceae Morotomi et al. 2012
Beduinibacterium Traore et al. 2017
Christensenella Morotomi et al. 2012
Gehongia Liu et al. 2022
Guopingia Liu et al. 2022
Luoshenia Liu et al. 2022
Maliibacterium Traore et al. 2023
Clostridiaceae Pribram 1933
Arthromitus Snel et al. 1995
Caloramator Collins et al. 1994
Clostridium Prazmowski 1880
Desnuesiella Hadjadj et al. 2016
Fervidicella Ogg and Patel 2010
Fonticella Fraj et al. 2013
Haloimpatiens Wu et al. 2016
Hathewaya Lawson and Rainey 2016
Inconstantimicrobium Wylensek et al. 2021
Oceanirhabdus Pi et al. 2013
Oxobacter Collins et al. 1994
Proteiniclasticum Zhang et al. 2010
Youngiibacter Lawson et al. 2014
Defluviitaleaceae Jabari et al. 2012
Defluviitalea Jabari et al. 2012
Dehalobacterium Magli et al. 1996
Desulfallaceae Watanabe et al. 2021
Desulfallas Watanabe et al. 2018
Desulfoscipio Watanabe et al. 2021
Desulfotruncus Watanabe et al. 2021
Sporotomaculum Brauman et al. 1998
Desulfitispora Sorokin and Muyzer 2010
Desulfitobacteriaceae Stackebrandt 2020
Acididesulfobacillus Sánchez-Andrea et al. 2023
Dehalobacter Holliger et al. 1998
Desulfitobacterium Utkin et al. 1994
Desulfosporosinus Stackebrandt et al. 1997
Dichloromethanomonas Kleindienst et al. 2017
Paradesulfitobacterium Li et al. 2021
Syntrophobotulus Friedrich et al. 1996
Desulfocucumaceae Watanabe et al. 2021
Desulfocucumis Watanabe et al. 2017
Desulfofundulus Watanabe et al. 2018
Desulfotomaculaceae Stackebrandt 2020
Desulfofalx Watanabe et al. 2021
Desulfofarcimen Watanabe et al. 2018
Desulfohalotomaculum Watanabe et al. 2018
Desulfolucanica Watanabe et al. 2023
Desulforadius Watanabe et al. 2021
Desulforamulus Watanabe et al. 2021
Desulfotomaculum Campbell and Postgate 1965
Desulfovectis Watanabe et al. 2021
Desulfurisporaceae Watanabe et al. 2021
Desulfurispora Kaksonen et al. 2007
Eubacteriaceae Ludwig et al. 2010
Acetobacterium Balch et al. 1977
Alkalibacter Garnova et al. 2005
Alkalibaculum Allen et al. 2010
Anaerofustis Finegold et al. 2004
Eubacterium Prévot 1938
Garciella Miranda-Tello et al. 2003
Irregularibacter Lagkouvardos et al. 2016
Pseudoramibacter Willems and Collins 1996
Rhabdanaerobium Liu et al. 2017
Feifaniaceae Liu et al. 2021
Feifania Liu et al. 2021
Gracilibacteraceae Lee et al. 2010
Gracilibacter Lee et al. 2006
Lutispora Shiratori et al. 2008
Heliobacteriaceae Madigan and Asao 2010
Heliobacterium Gest and Favinger 1985
Heliomicrobium Kyndt et al. 2021
Heliomonas Asao et al. 2012
Heliophilum Ormerod et al. 1996
Heliorestis Bryantseva et al. 2000
Lachnospiraceae Rainey 2010
Acetatifactor Pfeiffer et al. 2013
Acetitomaculum Greening and Leedle 1995
Agathobacter Rosero et al. 2016
Anaerobium Patil et al. 2015
Anaerobutyricum Shetty et al. 2018
Anaerocolumna Ueki et al. 2016
Anaeromicropila Ueki et al. 2023
Anaeropeptidivorans Köller et al. 2022
Anaerosacchariphilus Kim et al. 2019
Anaerosporobacter Jeong et al. 2007
Anaerostipes Schwiertz et al. 2002
Anaerotaenia Ueki et al. 2016
Anaerotignum Ueki et al. 2017
Bilifractor Wylensek et al. 2021
Blautia Liu et al. 2008
Butyribacter Zou et al. 2021
Butyrivibrio Bryant and Small 1956
Caecibacterium Oren et al. 2019
Catenibacillus Braune and Blaut 2018
Catonella Moore and Moore 1994
Cellulosilyticum Cai and Dong 2010
Chordicoccus Gaffney et al. 2023
Coprococcus Holdeman and Moore 1974
Cuneatibacter Lagkouvardos et al. 2016
Diplocloster Chaplin et al. 2022
Dorea Taras et al. 2002
Eisenbergiella Amir et al. 2014
Enterocloster Haas and Blanchard 2020
Epulopiscium Montgomery and Poliak 1988
Extibacter Lagkouvardos et al. 2017
Faecalicatena Sakamoto et al. 2017
Faecalimonas Sakamoto et al. 2017
Falcatimonas Watanabe et al. 2016
Frisingicoccus Lagkouvardos et al. 2016
Fusicatenibacter Takada et al. 2013
Fusimonas Kusada et al. 2017
Glucerabacter Kawata et al. 2018
Herbinix Koeck et al. 2015
Hespellia Whitehead et al. 2004
Hominifimenecus Afrizal et al. 2022
Hominisplanchenecus Afrizal et al. 2022
Hominiventricola Afrizal et al. 2022
Howardella Cook et al. 2007
Hungatella Kaur et al. 2014
Johnsonella Moore and Moore 1994
Jutongia Liu et al. 2022
Kineothrix Haas and Blanchard 2017
Konateibacter Sarr et al. 2022
Lachnoanaerobaculum Hedberg et al. 2012
Lachnobacterium Whitford et al. 2001
Lachnoclostridium Brahimi et al. 2017
Lachnocurva Holm et al. 2020
Lachnospira Bryant and Small 1956
Lachnotalea Jarzembowska et al. 2016
Lacrimispora Haas and Blanchard 2020
Lactonifactor Clavel et al. 2007
Lientehia Abdugheni et al. 2023
Luxibacter Naud et al. 2021
Marvinbryantia Wolin et al. 2008
Massilistercora Tall et al. 2020
Mediterraneibacter Togo et al. 2019
Merdimonas Seo et al. 2017
Mobilisporobacter Mbengue et al. 2016
Mobilitalea Podosokorskaya et al. 2014
Mordavella Ndongo et al. 2017
Moryella Carlier et al. 2007
Muricomes Lagkouvardos et al. 2016
Murimonas Kläring et al. 2015
Novisyntrophococcus Chai et al. 2021
Ohessyouella Vera-Ponce de Leon et al. 2022
Oliverpabstia Wylensek et al. 2021
Oribacterium Carlier et al. 2004
Pararoseburia Abdugheni et al. 2022
Parasporobacterium Lomans et al. 2004
Porcincola Wylensek et al. 2021
Pseudobutyrivibrio van Gylswyk et al. 1996
Robinsoniella Cotta et al. 2009
Roseburia Stanton and Savage 1983
Schaedlerella Soh et al. 2019
Sellimonas Seo et al. 2016
Shuttleworthia Downes et al. 2002
Sporobacterium Mechichi et al. 1999
Sporofaciens Rasmussen et al. 2021
Suipraeoptans Wylensek et al. 2021
Syntrophococcus Krumholz and Bryant 1986
Variimorphobacter Rettenmaier et al. 2021
Velocimicrobium Wylensek et al. 2021
Waltera Wylensek et al. 2021
Wansuia Liu et al. 2021
Weimeria Scarborough et al. 2020
Wujia Liu et al. 2021
Zhenhengia Liu et al. 2022
Alterileibacterium Boxberger et al. 2019
Aminicella Ueki et al. 2015
Aminipila Ueki et al. 2018
Anaerovorax Matthies et al. 2000
Bacilliculturomica Traore et al. 2017
Baileyella Wylensek et al. 2021
Emergencia Bessis et al. 2016
Gallibacter Zenner et al. 2021
Hominibacterium Borhanudin et al. 2023
Hornefia Wylensek et al. 2021
Ihubacter Ndongo et al. 2016
Lentihominibacter Liu et al. 2022
Mogibacterium Nakazawa et al. 2000
Sinanaerobacter Bao et al. 2021
Zhenpiania Liu et al. 2021
Alkaliphilus Takai et al. 2001
Anoxynatronum Garnova et al. 2003
Isachenkonia Zavarzina et al. 2020
Natronincola Zhilina et al. 1999
Serpentinicella Mei et al. 2016
Tindallia Kevbrin et al. 1999
Oscillospiraceae Peshkoff 1940
Acetanaerobacterium Chen and Dong 2004
Acetivibrio Patel et al. 1980
Acutalibacter Lagkouvardos et al. 2016
Agathobaculum Ahn et al. 2016
Anaerobacterium Horino et al. 2014
Anaerofilum Zellner et al. 1996
Anaeromassilibacillus Guilhot et al. 2017
Anaerotruncus Lawson et al. 2004
Angelakisella Mailhe et al. 2017
Bittarella Durand et al. 2017
Butyricicoccus Eeckhaut et al. 2008
Caproicibacter Flaiz et al. 2020
Caproicibacterium Gu et al. 2021
Caproiciproducens Kim et al. 2015
Cellulosibacter Watthanalamloet et al. 2012
Colidextribacter Ricaboni et al. 2017
Congzhengia Liu et al. 2021
Dysosmobacter Le Roy et al. 2020
Ercella van Gelder et al. 2014
Ethanoligenens Xing et al. 2006
Evtepia Strandwitz et al. 2016
Faecalibacterium Duncan et al. 2002
Fastidiosipila Falsen et al. 2005
Flintibacter Lagkouvardos et al. 2016
Fournierella Togo et al. 2017
Fumia Liu et al. 2022
Gemmiger Gossling and Moore 1975
Gorbachella Durand et al. 2017
Harryflintia Petzoldt et al. 2016
Hominenteromicrobium Afrizal et al. 2022
Hominicoprocola Afrizal et al. 2022
Hominilimicola Afrizal et al. 2022
Hominimerdicola Hitch et al. 2022
Hydrogeniiclostidium Chaplin et al. 2020
Hydrogenoanaerobacterium Song and Dong 2009
Intestinibacillus Ricaboni et al. 2017
Lawsonibacter Sakamoto et al. 2018
Ligaoa Liu et al. 2022
Mageeibacillus Austin et al. 2016
Marasmitruncus Bellali et al. 2022
Marseillibacter Ndongo et al. 2017
Massiliimalia Afouda et al. 2019
Merdimmobilis Abdugheni et al. 2023
Monoglobus Kim et al. 2017
Negativibacillus Ricaboni et al. 2021
Neglecta Bessis et al. 2016
Neobitarella Bilen et al. 2018
Oscillibacter Iino et al. 2007
Oscillospira Chatton and Perard 1913
Paludihabitans Deshmukh and Oren 2023
Papillibacter Defnoun et al. 2000
Petroclostridium Zhang et al. 2018
Pseudobacteroides Horino et al. 2014
Pseudoclostridium Zhang et al. 2018
Pseudoflavonifractor Carlier et al. 2010
Pseudoruminococcus Afouda et al. 2020
Pusillibacter Kitahara et al. 2022
Pygmaiobacter Bilen et al. 2017
Qingrenia Liu et al. 2021
Ructibacterium Zenner et al. 2021
Ruminiclostridium Zhang et al. 2018
Ruminococcoides Molinero et al. 2021
Ruminococcus Sijpesteijn 1948
Ruthenibacterium Shkoporov et al. 2016
Saccharofermentans Chen et al. 2010
Scatolibacter Zgheib et al. 2021
Solibaculum Sakamoto et al. 2021
Sporobacter Grech-Mora et al. 1996
Tepidibaculum Slobodkina et al. 2019
Thermocaproicibacter Nguyen et al. 2023
Thermoclostridium Zhang et al. 2018
Vescimonas Kitahara et al. 2021
Youxingia Liu et al. 2022
Zongyangia Liu et al. 2022
Cryptanaerobacter Juteau et al. 2005
Pelotomaculum Imachi et al. 2002
Peptococcaceae Rogosa 1971
Desulfonispora Denger et al. 1999
Peptococcus Kluyver and van Niel 1936
Acetoanaerobium Sleat et al. 1985
Asaccharospora Gerritsen et al. 2014
Clostridioides Lawson et al. 2016
Criibacterium Maheux et al. 2021
Filifactor Collins et al. 1994
Intestinibacter Gerritsen et al. 2014
Paeniclostridium Sasi Jyothsna et al. 2016
Paraclostridium Sasi Jyothsna et al. 2016
Peptacetobacter Chen et al. 2020
Peptoanaerobacter Sizova et al. 2016
Peptoclostridium Galperin et al. 2016
Peptostreptococcus Kluyver and van Niel 1936
Proteocatella Pikuta et al. 2009
Romboutsia Gerritsen et al. 2014
Sporacetigenium Chen et al. 2006
Tepidibacter Slobodkin et al. 2003
Terrisporobacter Gerritsen et al. 2014
Proteiniborus Niu et al. 2008
Proteinivoraceae Kevbrin et al. 2014
Alkalicella Quéméneur et al. 2021
Anaerobranca Engle et al. 1995
Proteinivorax Kevbrin et al. 2014
Syntrophomonadaceae Zhao et al. 1993
Pelospora Matthies et al. 2000
Syntrophomonas McInerney et al. 1982
Syntrophothermus Sekiguchi et al. 2000
Thermosyntropha Svetlitshnyi et al. 1996
Thermincolaceae Stackebrandt 2020
Phosphitispora Mao et al. 2021
Thermincola Sokolova et al. 2005
Thermoanaerosceptrum Hamilton-Brehm et al. 2021
Thermohalobacteraceae Spring 2021
Abyssisolibacter Kim et al. 2016
Anaeromonas Zhang et al. 2022
Brassicibacter Fang et al. 2012
Caldisalinibacter Ben Hania et al. 2015
Caloranaerobacter Wery et al. 2001
Clostridiisalibacter Liebgott et al. 2008
Sporosalibacterium Rezgui et al. 2011
Thermohalobacter Cayol et al. 2000
Vallitaleaceae Quéméneur et al. 2019
Anaerotalea Frolova et al. 2021
Natranaerovirga Sorokin et al. 2012
Petrocella Quéméneur et al. 2019
Vallitalea Lakhal et al. 2013
Xylanivirgaceae Liu et al. 2020
Xylanivirga Liu et al. 2020
Yeguiaceae Liu et al. 2021
Yeguia Liu et al. 2021
Data type count
  • 0
    Genome
  • 0
    16S rRNA